/EXTERNAL BLUEPRINT/mapping_coverage/K006288_14_lane_gembs
BACK
SAMPLE K006288_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1101385234 |
100% |
98714655614 |
100% |
| Mapped |
1090979844 |
99.06 % |
97663711224 |
98.94 % |
| Passed |
870466908 |
79.03 % |
75391904688 |
76.37 % |
| NotPassed |
220512936 |
20.02 % |
22271806536 |
22.56 % |
| |
|
|
|
|
| LowMAPQ |
185177102 |
16.81 % |
18702887302 |
18.95 % |
| MateUnmapped |
10405390 |
0.94 % |
1050944390 |
1.06 % |
| Duplicate |
20300233 |
1.84 % |
2050323533 |
2.08 % |
| BadOrientation |
30 |
0.00 % |
3030 |
0.00 % |
| LargeInsertSize |
16336 |
0.00 % |
1649936 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
15019235 |
1.36 % |
1516942735 |
1.54 % |
| Unmapped |
10405390 |
0.94 % |
1050944390 |
1.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
87912260319 |
100% |
| Passed |
70634313155 |
80.35 % |
| Trimmed |
3697461973 |
4.21 % |
| Clipped |
98129205 |
0.11 % |
| Overlapping |
12422226426 |
14.13 % |
| LowQuality |
1060129560 |
1.21 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |