/EXTERNAL BLUEPRINT/methylation/K006288_14_lane_gembs

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SAMPLE K006288_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26577497 18400509 69.23 %
NonRefCpG 329618 130070 39.46 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006288_14_lane_gembs_coverage_refCpG.png ./IMG//K006288_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006288_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006288_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006288_14_lane_gembs_quality_refcpg.png ./IMG//K006288_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006288_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6378971 13.71 % 4697838 12.76 % 117463 21.23 % 32368 10.63 %
Intermediate (0.3-0.7) 11205131 24.08 % 7072950 19.21 % 162315 29.34 % 73859 24.25 %
Methylated (0.7-1) 28954187 62.22 % 25041285 68.02 % 273537 49.44 % 198404 65.13 %
Median Methylation 0.780 0.810 0.690 0.790