/EXTERNAL BLUEPRINT/K006295_K006299_22_lane_gembs/C003JB.Bisulfite-Seq.DNA_Methylation.EGAX00001195935_20

BACK

SAMPLE K006295_K006299_22_lane_gembs LANE C003JB.Bisulfite-Seq.DNA_Methylation.EGAX00001195935_20

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1568975644 100.00 % 784487822 100.00 % 784487822 100.00 %
General Reads 1490351521 94.99 % 747475622 95.28 % 742875899 94.70 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 30481195 1.94 % 15268446 1.95 % 15212749 1.94 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 48142928 3.07 % 21743754 2.77 % 26399174 3.37 %
Bisulfite_reads C2T 808807975 51.55 % 405723688 51.72 % 403084287 51.38 %
Bisulfite_reads G2A 712024741 45.38 % 357020380 45.51 % 355004361 45.25 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 586734133
Average Unique 74.79 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 55721329229 34.82 % 22809202542 28.51 % 32912126687 41.13 %
Base Counts Overall C 23581002838 14.73 % 1326591190 1.66 % 22254411648 27.81 %
Base Counts Overall G 23727649368 14.83 % 22463928091 28.07 % 1263721277 1.58 %
Base Counts Overall T 55379364208 34.60 % 32617804557 40.76 % 22761559651 28.45 %
Base Counts Overall N 1626170045 1.02 % 800231464 1.00 % 825938581 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991126493038092
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 729910675



Mapping Quality

Mapping Quality Histogram
C003JB.Bisulfite-Seq.DNA_Methylation.EGAX00001195935_20.mapq.png



Read Length

Read Length Reads
101 784487822
101 784487822



Insert Size Plot

Insert Size Histogram
C003JB.Bisulfite-Seq.DNA_Methylation.EGAX00001195935_20.isize.png