/EXTERNAL BLUEPRINT/methylation/K006295_K006299_22_lane_gembs
BACK
SAMPLE K006295_K006299_22_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26313628 |
16726118 |
63.56 % |
| NonRefCpG |
326331 |
116527 |
35.71 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7493726 |
16.85 % |
4673213 |
13.85 % |
117228 |
22.45 % |
31004 |
11.49 % |
| Intermediate (0.3-0.7) |
9981665 |
22.44 % |
5872879 |
17.40 % |
145225 |
27.81 % |
57065 |
21.15 % |
| Methylated (0.7-1) |
27005470 |
60.71 % |
23197607 |
68.75 % |
259806 |
49.75 % |
181715 |
67.36 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.790 |
|
0.840 |
|
0.690 |
|
0.820 |
|