/EXTERNAL BLUEPRINT/K006293_10_lane_gembs

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SAMPLE K006293_10_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1136834750 100.00 % 568417375 100.00 % 568417375 100.00 %
General Reads 1089537500 95.84 % 546791008 96.20 % 542746492 95.48 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 15213924 1.34 % 7630500 1.34 % 7583424 1.33 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 32083326 2.82 % 13995867 2.46 % 18087459 3.18 %
Bisulfite_reads C2T 577531360 50.80 % 289835207 50.99 % 287696153 50.61 %
Bisulfite_reads G2A 527220064 46.38 % 264586301 46.55 % 262633763 46.20 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 450391973
Average Unique 79.24 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 42322161165 36.50 % 16627155234 28.68 % 25695005931 44.32 %
Base Counts Overall C 15127466673 13.05 % 844658791 1.46 % 14282807882 24.63 %
Base Counts Overall G 15359332754 13.25 % 14559307164 25.11 % 800025590 1.38 %
Base Counts Overall T 41973222727 36.20 % 25373796664 43.76 % 16599426063 28.63 %
Base Counts Overall N 1174961181 1.01 % 573654397 0.99 % 601306784 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989242959935825
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 537614848



Mapping Quality

Mapping Quality Histogram
K006293_10_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006293_10_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S00622.Bisulfite-Seq.DNA_Methylation.EGAX00001147735_10