/EXTERNAL BLUEPRINT/mapping_coverage/K006293_10_lane_gembs
BACK
SAMPLE K006293_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1071741144 |
100% |
97166644114 |
100% |
| Mapped |
1060742677 |
98.97 % |
96055798947 |
98.86 % |
| Passed |
858313269 |
80.09 % |
75610428739 |
77.82 % |
| NotPassed |
202429408 |
18.89 % |
20445370208 |
21.04 % |
| |
|
|
|
|
| LowMAPQ |
171010512 |
15.96 % |
17272061712 |
17.78 % |
| MateUnmapped |
10998467 |
1.03 % |
1110845167 |
1.14 % |
| Duplicate |
17808171 |
1.66 % |
1798625271 |
1.85 % |
| BadOrientation |
26 |
0.00 % |
2626 |
0.00 % |
| LargeInsertSize |
9504 |
0.00 % |
959904 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13601195 |
1.27 % |
1373720695 |
1.41 % |
| Unmapped |
10998467 |
1.03 % |
1110845167 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86684120822 |
100% |
| Passed |
70682102410 |
81.54 % |
| Trimmed |
3694032889 |
4.26 % |
| Clipped |
101894625 |
0.12 % |
| Overlapping |
10971797458 |
12.66 % |
| LowQuality |
1234293440 |
1.42 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |