/EXTERNAL BLUEPRINT/methylation/K006293_10_lane_gembs

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SAMPLE K006293_10_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26847096 21606921 80.48 %
NonRefCpG 324083 167822 51.78 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006293_10_lane_gembs_coverage_refCpG.png ./IMG//K006293_10_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006293_10_lane_gembs_coverage_nonRefCpG.png ./IMG//K006293_10_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006293_10_lane_gembs_quality_refcpg.png ./IMG//K006293_10_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006293_10_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6417480 12.94 % 4904517 11.38 % 107214 18.66 % 33794 8.95 %
Intermediate (0.3-0.7) 7523185 15.17 % 5494464 12.75 % 121879 21.21 % 62431 16.53 %
Methylated (0.7-1) 35641368 71.88 % 32693914 75.87 % 345555 60.13 % 281401 74.52 %
Median Methylation 0.850 0.870 0.790 0.860