/EXTERNAL BLUEPRINT/K006279_K006281_11_lane_gembs/25145.Bisulfite-Seq.DNA_Methylation.EGAX00001128261_8

BACK

SAMPLE K006279_K006281_11_lane_gembs LANE 25145.Bisulfite-Seq.DNA_Methylation.EGAX00001128261_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 858573758 100.00 % 429286879 100.00 % 429286879 100.00 %
General Reads 837638719 97.56 % 420015244 97.84 % 417623475 97.28 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9356799 1.09 % 4688415 1.09 % 4668384 1.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11578240 1.35 % 4583220 1.07 % 6995020 1.63 %
Bisulfite_reads C2T 447709794 52.15 % 224508536 52.30 % 223201258 51.99 %
Bisulfite_reads G2A 399285724 46.51 % 200195123 46.63 % 199090601 46.38 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 338801028
Average Unique 78.92 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 31760858694 36.27 % 12405988645 28.33 % 19354870049 44.20 %
Base Counts Overall C 11502212437 13.13 % 224326752 0.51 % 11277885685 25.76 %
Base Counts Overall G 11765430704 13.43 % 11548260280 26.37 % 217170424 0.50 %
Base Counts Overall T 31610052825 36.10 % 19175479945 43.79 % 12434572880 28.40 %
Base Counts Overall N 935968656 1.07 % 433206036 0.99 % 502762620 1.15 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9995173889052903
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 411906241



Mapping Quality

Mapping Quality Histogram
25145.Bisulfite-Seq.DNA_Methylation.EGAX00001128261_8.mapq.png



Read Length

Read Length Reads
101 429286879
101 429286879



Insert Size Plot

Insert Size Histogram
25145.Bisulfite-Seq.DNA_Methylation.EGAX00001128261_8.isize.png