/EXTERNAL BLUEPRINT/K006279_K006281_11_lane_gembs

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SAMPLE K006279_K006281_11_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1788277920 100.00 % 894138960 100.00 % 894138960 100.00 %
General Reads 1725640806 96.50 % 865715526 96.82 % 859925280 96.17 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13622425 0.76 % 6829039 0.76 % 6793386 0.76 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 49014689 2.74 % 21594395 2.42 % 27420294 3.07 %
Bisulfite_reads C2T 925309242 51.74 % 464288908 51.93 % 461020334 51.56 %
Bisulfite_reads G2A 813953989 45.52 % 408255657 45.66 % 405698332 45.37 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 678466093
Average Unique 75.88 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 65037967979 35.66 % 26017360941 28.53 % 39020607038 42.78 %
Base Counts Overall C 25118225387 13.77 % 745938887 0.82 % 24372286500 26.72 %
Base Counts Overall G 25491766103 13.98 % 24758821309 27.15 % 732944794 0.80 %
Base Counts Overall T 64658834805 35.45 % 38758512810 42.50 % 25900321995 28.40 %
Base Counts Overall N 2097553566 1.15 % 921539973 1.01 % 1176013593 1.29 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.999499068894512
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 841387781



Mapping Quality

Mapping Quality Histogram
K006279_K006281_11_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006279_K006281_11_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
25145.Bisulfite-Seq.DNA_Methylation.EGAX00001128265_3
25145.Bisulfite-Seq.DNA_Methylation.EGAX00001128261_8