/EXTERNAL BLUEPRINT/K006311_21_lane_gembs/S007DD.Bisulfite-Seq.DNA_Methylation.EGAX00001208465_21

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SAMPLE K006311_21_lane_gembs LANE S007DD.Bisulfite-Seq.DNA_Methylation.EGAX00001208465_21

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1187680384 100.00 % 593840192 100.00 % 593840192 100.00 %
General Reads 1142126117 96.16 % 572216639 96.36 % 569909478 95.97 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20352437 1.71 % 10192273 1.72 % 10160164 1.71 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25201830 2.12 % 11431280 1.92 % 13770550 2.32 %
Bisulfite_reads C2T 615503076 51.82 % 308459554 51.94 % 307043522 51.70 %
Bisulfite_reads G2A 546975478 46.05 % 273949358 46.13 % 273026120 45.98 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 440001527
Average Unique 74.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41639553409 34.38 % 17231502795 28.46 % 24408050614 40.31 %
Base Counts Overall C 18345594083 15.15 % 1085472513 1.79 % 17260121570 28.51 %
Base Counts Overall G 18466762238 15.25 % 17365881281 28.68 % 1100880957 1.82 %
Base Counts Overall T 41435296104 34.22 % 24263099205 40.07 % 17172196899 28.36 %
Base Counts Overall N 1211894540 1.00 % 603594393 1.00 % 608300147 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.998618196154186
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 554083403



Mapping Quality

Mapping Quality Histogram
S007DD.Bisulfite-Seq.DNA_Methylation.EGAX00001208465_21.mapq.png



Read Length

Read Length Reads
100 22149397
101 571690795
100 22149397
101 571690795



Insert Size Plot

Insert Size Histogram
S007DD.Bisulfite-Seq.DNA_Methylation.EGAX00001208465_21.isize.png