/EXTERNAL BLUEPRINT/mapping_coverage/K006311_21_lane_gembs
BACK
SAMPLE K006311_21_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1121269389 |
100% |
97647329144 |
100% |
| Mapped |
1109664542 |
98.97 % |
96475674499 |
98.80 % |
| Passed |
828607174 |
73.90 % |
68098701915 |
69.74 % |
| NotPassed |
281057368 |
25.07 % |
28376972584 |
29.06 % |
| |
|
|
|
|
| LowMAPQ |
236121812 |
21.06 % |
23839520356 |
24.41 % |
| MateUnmapped |
11604847 |
1.03 % |
1171654645 |
1.20 % |
| Duplicate |
20932658 |
1.87 % |
2114037668 |
2.16 % |
| BadOrientation |
92 |
0.00 % |
9292 |
0.00 % |
| LargeInsertSize |
48338 |
0.00 % |
4880462 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23954468 |
2.14 % |
2418524806 |
2.48 % |
| Unmapped |
11604847 |
1.03 % |
1171654645 |
1.20 % |
Base Level Counts
| Bases |
# |
% |
| Total |
83643171774 |
100% |
| Passed |
63923827827 |
76.42 % |
| Trimmed |
3491427642 |
4.17 % |
| Clipped |
78021634 |
0.09 % |
| Overlapping |
15466448225 |
18.49 % |
| LowQuality |
683446446 |
0.82 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |