/EXTERNAL BLUEPRINT/methylation/K006311_21_lane_gembs

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SAMPLE K006311_21_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26075865 18457490 70.78 %
NonRefCpG 344026 132913 38.63 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006311_21_lane_gembs_coverage_refCpG.png ./IMG//K006311_21_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006311_21_lane_gembs_coverage_nonRefCpG.png ./IMG//K006311_21_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006311_21_lane_gembs_quality_refcpg.png ./IMG//K006311_21_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006311_21_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5188539 11.88 % 3586336 10.42 % 92049 17.19 % 20145 7.32 %
Intermediate (0.3-0.7) 6453294 14.78 % 3734988 10.85 % 123638 23.09 % 39227 14.26 %
Methylated (0.7-1) 32020996 73.34 % 27094634 78.73 % 319662 59.71 % 215774 78.42 %
Median Methylation 0.880 0.900 0.790 0.890