/EXTERNAL BLUEPRINT/K006377_15_lane_gembs

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SAMPLE K006377_15_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1369412904 100.00 % 684706452 100.00 % 684706452 100.00 %
General Reads 1335293625 97.51 % 670718281 97.96 % 664575344 97.06 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6239803 0.46 % 3132447 0.46 % 3107356 0.45 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27879476 2.04 % 10855724 1.59 % 17023752 2.49 %
Bisulfite_reads C2T 685901283 50.09 % 344497508 50.31 % 341403775 49.86 %
Bisulfite_reads G2A 655632145 47.88 % 329353220 48.10 % 326278925 47.65 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 570526860
Average Unique 83.32 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 54137984421 38.76 % 20698136961 29.64 % 33439847460 47.88 %
Base Counts Overall C 14997632798 10.74 % 606643916 0.87 % 14390988882 20.61 %
Base Counts Overall G 15149139799 10.85 % 14567161231 20.86 % 581978568 0.83 %
Base Counts Overall T 54001687357 38.66 % 33279766419 47.65 % 20721920938 29.67 %
Base Counts Overall N 1393671833 1.00 % 688349577 0.99 % 705322256 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991020715038562
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 652122789



Mapping Quality

Mapping Quality Histogram
K006377_15_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006377_15_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
110CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001343011_15