/EXTERNAL BLUEPRINT/K006269_11_lane_gembs/C005PS.Bisulfite-Seq.DNA_Methylation.EGAX00001097775_11

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SAMPLE K006269_11_lane_gembs LANE C005PS.Bisulfite-Seq.DNA_Methylation.EGAX00001097775_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 4087582070 100.00 % 2043791035 100.00 % 2043791035 100.00 %
General Reads 3960619139 96.89 % 1986707848 97.21 % 1973911291 96.58 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 44297447 1.08 % 22202077 1.09 % 22095370 1.08 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 82665484 2.02 % 34881110 1.71 % 47784374 2.34 %
Bisulfite_reads C2T 2085253873 51.01 % 1046038936 51.18 % 1039214937 50.85 %
Bisulfite_reads G2A 1919662713 46.96 % 962870989 47.11 % 956791724 46.81 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1638129539
Average Unique 80.15 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 152063119169 36.54 % 59423475415 28.56 % 92639643754 44.52 %
Base Counts Overall C 53990589312 12.97 % 2732618021 1.31 % 51257971291 24.63 %
Base Counts Overall G 54882238842 13.19 % 52251376150 25.11 % 2630862692 1.26 %
Base Counts Overall T 151018815649 36.29 % 91621743091 44.03 % 59397072558 28.54 %
Base Counts Overall N 4246475640 1.02 % 2071406629 1.00 % 2175069011 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991231341371444
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1947043999



Mapping Quality

Mapping Quality Histogram
C005PS.Bisulfite-Seq.DNA_Methylation.EGAX00001097775_11.mapq.png



Read Length

Read Length Reads
100 366066264
101 1677724771
100 366066264
101 1677724771



Insert Size Plot

Insert Size Histogram
C005PS.Bisulfite-Seq.DNA_Methylation.EGAX00001097775_11.isize.png