/EXTERNAL BLUEPRINT/mapping_coverage/K006269_11_lane_gembs
BACK
SAMPLE K006269_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3845293392 |
100% |
335502483278 |
100% |
| Mapped |
3809020943 |
99.06 % |
331845605891 |
98.91 % |
| Passed |
3035166477 |
78.93 % |
253812224736 |
75.65 % |
| NotPassed |
773854466 |
20.12 % |
78033381155 |
23.26 % |
| |
|
|
|
|
| LowMAPQ |
609474412 |
15.85 % |
61447703784 |
18.32 % |
| MateUnmapped |
36272449 |
0.94 % |
3656877387 |
1.09 % |
| Duplicate |
115478108 |
3.00 % |
11655496082 |
3.47 % |
| BadOrientation |
76 |
0.00 % |
7664 |
0.00 % |
| LargeInsertSize |
39640 |
0.00 % |
3996540 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
48862230 |
1.27 % |
4926177085 |
1.47 % |
| Unmapped |
36272449 |
0.94 % |
3656877387 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
305975573174 |
100% |
| Passed |
236829499088 |
77.40 % |
| Trimmed |
12837080165 |
4.20 % |
| Clipped |
412370238 |
0.13 % |
| Overlapping |
51750978200 |
16.91 % |
| LowQuality |
4145645483 |
1.35 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |