/EXTERNAL BLUEPRINT/methylation/K006269_11_lane_gembs

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SAMPLE K006269_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26956222 21837243 81.01 %
NonRefCpG 312994 190173 60.76 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006269_11_lane_gembs_coverage_refCpG.png ./IMG//K006269_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006269_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006269_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006269_11_lane_gembs_quality_refcpg.png ./IMG//K006269_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006269_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5998991 11.66 % 5143059 11.21 % 59425 10.44 % 23785 5.64 %
Intermediate (0.3-0.7) 4879313 9.49 % 3708679 8.08 % 83702 14.70 % 42926 10.18 %
Methylated (0.7-1) 40553364 78.85 % 37041201 80.71 % 426260 74.86 % 355089 84.18 %
Median Methylation 0.900 0.900 0.880 0.900