/EXTERNAL BLUEPRINT/K011716_1_lane_gembs

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SAMPLE K011716_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1024243428 100.00 % 512121714 100.00 % 512121714 100.00 %
General Reads 991974093 96.85 % 497198613 97.09 % 494775480 96.61 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 17437008 1.70 % 8730910 1.70 % 8706098 1.70 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14832327 1.45 % 6192191 1.21 % 8640136 1.69 %
Bisulfite_reads C2T 531740323 51.92 % 266575185 52.05 % 265165138 51.78 %
Bisulfite_reads G2A 477670778 46.64 % 239354338 46.74 % 238316440 46.54 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 391015215
Average Unique 76.35 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 36535358666 34.97 % 14748467307 28.23 % 21786891359 41.71 %
Base Counts Overall C 15219858113 14.57 % 740397087 1.42 % 14479461026 27.72 %
Base Counts Overall G 15367210140 14.71 % 14636911470 28.02 % 730298670 1.40 %
Base Counts Overall T 36285116231 34.73 % 21594544069 41.34 % 14690572162 28.12 %
Base Counts Overall N 1065286506 1.02 % 516094895 0.99 % 549191611 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992751779205599
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 482264496



Mapping Quality

Mapping Quality Histogram
K011716_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011716_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011716_1894658_2