/EXTERNAL BLUEPRINT/mapping_coverage/K011716_1_lane_gembs
BACK
SAMPLE K011716_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
980987327 |
100% |
85082079273 |
100% |
| Mapped |
971982570 |
99.08 % |
84172598816 |
98.93 % |
| Passed |
751858224 |
76.64 % |
61940039870 |
72.80 % |
| NotPassed |
220124346 |
22.44 % |
22232558946 |
26.13 % |
| |
|
|
|
|
| LowMAPQ |
191108150 |
19.48 % |
19301923150 |
22.69 % |
| MateUnmapped |
9004757 |
0.92 % |
909480457 |
1.07 % |
| Duplicate |
11026062 |
1.12 % |
1113632262 |
1.31 % |
| BadOrientation |
70 |
0.00 % |
7070 |
0.00 % |
| LargeInsertSize |
31120 |
0.00 % |
3143120 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17958944 |
1.83 % |
1813853344 |
2.13 % |
| Unmapped |
9004757 |
0.92 % |
909480457 |
1.07 % |
Base Level Counts
| Bases |
# |
% |
| Total |
75931853934 |
100% |
| Passed |
58304872658 |
76.79 % |
| Trimmed |
3123323761 |
4.11 % |
| Clipped |
88110069 |
0.12 % |
| Overlapping |
13903703995 |
18.31 % |
| LowQuality |
511843451 |
0.67 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |