/EXTERNAL BLUEPRINT/methylation/K011716_1_lane_gembs

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SAMPLE K011716_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26212747 18394820 70.18 %
NonRefCpG 348105 134890 38.75 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K011716_1_lane_gembs_coverage_refCpG.png ./IMG//K011716_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K011716_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K011716_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K011716_1_lane_gembs_quality_refcpg.png ./IMG//K011716_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K011716_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5848776 13.20 % 3988594 11.51 % 106854 19.32 % 24769 8.67 %
Intermediate (0.3-0.7) 7205685 16.26 % 4232156 12.21 % 130822 23.65 % 45249 15.84 %
Methylated (0.7-1) 31269162 70.55 % 26429317 76.27 % 315398 57.03 % 215659 75.49 %
Median Methylation 0.850 0.880 0.770 0.870