/EXTERNAL BLUEPRINT/K006264_19_lane_gembs

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SAMPLE K006264_19_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1773579768 100.00 % 886789884 100.00 % 886789884 100.00 %
General Reads 1717917016 96.86 % 861337214 97.13 % 856579802 96.59 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 17443936 0.98 % 8737233 0.99 % 8706703 0.98 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 38218816 2.15 % 16715437 1.88 % 21503379 2.42 %
Bisulfite_reads C2T 905480501 51.05 % 454009834 51.20 % 451470667 50.91 %
Bisulfite_reads G2A 829880451 46.79 % 416064613 46.92 % 413815838 46.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 699526478
Average Unique 78.88 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 65596396766 36.26 % 25364515018 28.04 % 40231881748 44.48 %
Base Counts Overall C 23779232480 13.14 % 1205786511 1.33 % 22573445969 24.96 %
Base Counts Overall G 24107201202 13.33 % 22968913684 25.39 % 1138287518 1.26 %
Base Counts Overall T 65545335647 36.23 % 39990257413 44.21 % 25555078234 28.25 %
Base Counts Overall N 1876970241 1.04 % 923095542 1.02 % 953874699 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9983103174874245
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 841085166



Mapping Quality

Mapping Quality Histogram
K006264_19_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006264_19_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C0011I.Bisulfite-Seq.DNA_Methylation.EGAX00001086972_19