/EXTERNAL BLUEPRINT/mapping_coverage/K006264_19_lane_gembs
BACK
SAMPLE K006264_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1691647187 |
100% |
151726089680 |
100% |
| Mapped |
1673967284 |
98.95 % |
149940419477 |
98.82 % |
| Passed |
1346002904 |
79.57 % |
116816017097 |
76.99 % |
| NotPassed |
327964380 |
19.39 % |
33124402380 |
21.83 % |
| |
|
|
|
|
| LowMAPQ |
277028856 |
16.38 % |
27979914456 |
18.44 % |
| MateUnmapped |
17679903 |
1.05 % |
1785670203 |
1.18 % |
| Duplicate |
26296335 |
1.55 % |
2655929835 |
1.75 % |
| BadOrientation |
18 |
0.00 % |
1818 |
0.00 % |
| LargeInsertSize |
20638 |
0.00 % |
2084438 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24618533 |
1.46 % |
2486471833 |
1.64 % |
| Unmapped |
17679903 |
1.05 % |
1785670203 |
1.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
135940116952 |
100% |
| Passed |
108161603555 |
79.57 % |
| Trimmed |
5752012025 |
4.23 % |
| Clipped |
273549623 |
0.20 % |
| Overlapping |
18850550232 |
13.87 % |
| LowQuality |
2902401517 |
2.14 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |