/EXTERNAL BLUEPRINT/methylation/K006264_19_lane_gembs

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SAMPLE K006264_19_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26858081 22685787 84.47 %
NonRefCpG 300800 174438 57.99 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006264_19_lane_gembs_coverage_refCpG.png ./IMG//K006264_19_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006264_19_lane_gembs_coverage_nonRefCpG.png ./IMG//K006264_19_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006264_19_lane_gembs_quality_refcpg.png ./IMG//K006264_19_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006264_19_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6275446 12.64 % 5157162 11.62 % 77328 14.60 % 27877 7.51 %
Intermediate (0.3-0.7) 6528615 13.15 % 4969950 11.20 % 102865 19.42 % 53320 14.37 %
Methylated (0.7-1) 36849063 74.21 % 34250720 77.18 % 349615 65.99 % 289856 78.12 %
Median Methylation 0.870 0.880 0.830 0.870