/EXTERNAL BLUEPRINT/K006312_19_lane_gembs/S008H1.Bisulfite-Seq.DNA_Methylation.EGAX00001208466_19

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SAMPLE K006312_19_lane_gembs LANE S008H1.Bisulfite-Seq.DNA_Methylation.EGAX00001208466_19

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1202383538 100.00 % 601191769 100.00 % 601191769 100.00 %
General Reads 1140422004 94.85 % 570332324 94.87 % 570089680 94.83 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 26781875 2.23 % 13407381 2.23 % 13374494 2.22 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 35179659 2.93 % 17452064 2.90 % 17727595 2.95 %
Bisulfite_reads C2T 625798433 52.05 % 313154877 52.09 % 312643556 52.00 %
Bisulfite_reads G2A 541405446 45.03 % 270584828 45.01 % 270820618 45.05 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 431500097
Average Unique 71.77 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41847037104 34.12 % 17513194326 28.56 % 24333842778 39.68 %
Base Counts Overall C 18961735711 15.46 % 1194805237 1.95 % 17766930474 28.97 %
Base Counts Overall G 19158877697 15.62 % 17879971780 29.16 % 1278905917 2.09 %
Base Counts Overall T 41458577858 33.80 % 24125389555 39.34 % 17333188303 28.27 %
Base Counts Overall N 1216892506 0.99 % 608199540 0.99 % 608692966 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988232604290154
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 554309382



Mapping Quality

Mapping Quality Histogram
S008H1.Bisulfite-Seq.DNA_Methylation.EGAX00001208466_19.mapq.png



Read Length

Read Length Reads
101 601191769
101 601191769



Insert Size Plot

Insert Size Histogram
S008H1.Bisulfite-Seq.DNA_Methylation.EGAX00001208466_19.isize.png