/EXTERNAL BLUEPRINT/mapping_coverage/K006312_19_lane_gembs
BACK
SAMPLE K006312_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1116259739 |
100% |
97079779634 |
100% |
| Mapped |
1103053209 |
98.82 % |
95745920104 |
98.63 % |
| Passed |
798401221 |
71.52 % |
64976069316 |
66.93 % |
| NotPassed |
304651988 |
27.29 % |
30769850788 |
31.70 % |
| |
|
|
|
|
| LowMAPQ |
255668530 |
22.90 % |
25822521530 |
26.60 % |
| MateUnmapped |
13206530 |
1.18 % |
1333859530 |
1.37 % |
| Duplicate |
24263540 |
2.17 % |
2450617540 |
2.52 % |
| BadOrientation |
104 |
0.00 % |
10504 |
0.00 % |
| LargeInsertSize |
51514 |
0.00 % |
5202914 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24668300 |
2.21 % |
2491498300 |
2.57 % |
| Unmapped |
13206530 |
1.18 % |
1333859530 |
1.37 % |
Base Level Counts
| Bases |
# |
% |
| Total |
80617371901 |
100% |
| Passed |
61033041063 |
75.71 % |
| Trimmed |
3356727300 |
4.16 % |
| Clipped |
74204599 |
0.09 % |
| Overlapping |
15567097986 |
19.31 % |
| LowQuality |
586300953 |
0.73 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |