/EXTERNAL BLUEPRINT/methylation/K006312_19_lane_gembs

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SAMPLE K006312_19_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25976802 17697808 68.13 %
NonRefCpG 346559 125187 36.12 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006312_19_lane_gembs_coverage_refCpG.png ./IMG//K006312_19_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006312_19_lane_gembs_coverage_nonRefCpG.png ./IMG//K006312_19_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006312_19_lane_gembs_quality_refcpg.png ./IMG//K006312_19_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006312_19_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5296816 12.35 % 3586388 10.91 % 93220 17.53 % 19166 7.38 %
Intermediate (0.3-0.7) 6458173 15.05 % 3539880 10.77 % 125803 23.66 % 37428 14.41 %
Methylated (0.7-1) 31150249 72.60 % 25736967 78.32 % 312626 58.80 % 203078 78.21 %
Median Methylation 0.870 0.900 0.780 0.890