/EXTERNAL BLUEPRINT/K006287_14_lane_gembs

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SAMPLE K006287_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1187122088 100.00 % 593561044 100.00 % 593561044 100.00 %
General Reads 1132044773 95.36 % 567511611 95.61 % 564533162 95.11 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16081369 1.35 % 8057063 1.36 % 8024306 1.35 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 38995946 3.28 % 17992370 3.03 % 21003576 3.54 %
Bisulfite_reads C2T 600082216 50.55 % 300839753 50.68 % 299242463 50.41 %
Bisulfite_reads G2A 548043926 46.17 % 274728921 46.28 % 273315005 46.05 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 467028569
Average Unique 78.68 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43255276007 35.72 % 16873460458 27.87 % 26381815549 43.58 %
Base Counts Overall C 16783500943 13.86 % 1367390868 2.26 % 15416110075 25.46 %
Base Counts Overall G 16918417791 13.97 % 15599977347 25.77 % 1318440444 2.18 %
Base Counts Overall T 42894648704 35.42 % 26103720888 43.12 % 16790927816 27.73 %
Base Counts Overall N 1234609531 1.02 % 598676927 0.99 % 635932604 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9825065103381365
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 558552398



Mapping Quality

Mapping Quality Histogram
K006287_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006287_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S0022I.Bisulfite-Seq.DNA_Methylation.EGAX00001147729_14