/EXTERNAL BLUEPRINT/mapping_coverage/K006287_14_lane_gembs
BACK
SAMPLE K006287_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1102969351 |
100% |
98552536568 |
100% |
| Mapped |
1092737197 |
99.07 % |
97519089014 |
98.95 % |
| Passed |
869293456 |
78.81 % |
74951271173 |
76.05 % |
| NotPassed |
223443741 |
20.26 % |
22567817841 |
22.90 % |
| |
|
|
|
|
| LowMAPQ |
180375800 |
16.35 % |
18217955800 |
18.49 % |
| MateUnmapped |
10232154 |
0.93 % |
1033447554 |
1.05 % |
| Duplicate |
29105518 |
2.64 % |
2939657318 |
2.98 % |
| BadOrientation |
20 |
0.00 % |
2020 |
0.00 % |
| LargeInsertSize |
14428 |
0.00 % |
1457228 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13947975 |
1.26 % |
1408745475 |
1.43 % |
| Unmapped |
10232154 |
0.93 % |
1033447554 |
1.05 % |
Base Level Counts
| Bases |
# |
% |
| Total |
87792601983 |
100% |
| Passed |
70213431199 |
79.98 % |
| Trimmed |
3691564216 |
4.20 % |
| Clipped |
97013521 |
0.11 % |
| Overlapping |
12744317289 |
14.52 % |
| LowQuality |
1046275758 |
1.19 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |