/EXTERNAL BLUEPRINT/methylation/K006287_14_lane_gembs

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SAMPLE K006287_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26707149 20995760 78.61 %
NonRefCpG 351271 158313 45.07 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006287_14_lane_gembs_coverage_refCpG.png ./IMG//K006287_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006287_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006287_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006287_14_lane_gembs_quality_refcpg.png ./IMG//K006287_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006287_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6019752 12.20 % 4483919 10.66 % 129203 20.70 % 32295 8.61 %
Intermediate (0.3-0.7) 7649370 15.50 % 5376285 12.79 % 138013 22.11 % 64719 17.25 %
Methylated (0.7-1) 35690986 72.31 % 32190119 76.55 % 357005 57.19 % 278082 74.14 %
Median Methylation 0.860 0.880 0.770 0.860