/EXTERNAL BLUEPRINT/K006277_11_lane_gembs

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SAMPLE K006277_11_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1864673576 100.00 % 932336788 100.00 % 932336788 100.00 %
General Reads 1804056764 96.75 % 906099515 97.19 % 897957249 96.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 23964219 1.29 % 12029997 1.29 % 11934222 1.28 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 36652593 1.97 % 14207276 1.52 % 22445317 2.41 %
Bisulfite_reads C2T 946244101 50.75 % 475241300 50.97 % 471002801 50.52 %
Bisulfite_reads G2A 881776882 47.29 % 442888212 47.50 % 438888670 47.07 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 754649034
Average Unique 80.94 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70845907033 37.25 % 26973980810 28.36 % 43871926223 46.13 %
Base Counts Overall C 23110837795 12.15 % 863331442 0.91 % 22247506353 23.39 %
Base Counts Overall G 23797332795 12.51 % 22981182757 24.17 % 816150038 0.86 %
Base Counts Overall T 70314482685 36.97 % 43319960675 45.55 % 26994522010 28.39 %
Base Counts Overall N 2128144444 1.12 % 959896692 1.01 % 1168247752 1.23 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9995134952779128
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 889835714



Mapping Quality

Mapping Quality Histogram
K006277_11_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006277_11_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
MO7071.Bisulfite-Seq.DNA_Methylation.EGAX00001128259_11