/EXTERNAL BLUEPRINT/mapping_coverage/K006277_11_lane_gembs
BACK
SAMPLE K006277_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1728712834 |
100% |
157991980155 |
100% |
| Mapped |
1709612038 |
98.90 % |
156062799759 |
98.78 % |
| Passed |
1347986927 |
77.98 % |
119538663548 |
75.66 % |
| NotPassed |
361625111 |
20.92 % |
36524136211 |
23.12 % |
| |
|
|
|
|
| LowMAPQ |
263142520 |
15.22 % |
26577394520 |
16.82 % |
| MateUnmapped |
19100796 |
1.10 % |
1929180396 |
1.22 % |
| Duplicate |
75379833 |
4.36 % |
7613363133 |
4.82 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
14130 |
0.00 % |
1427130 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23088618 |
1.34 % |
2331950418 |
1.48 % |
| Unmapped |
19100796 |
1.10 % |
1929180396 |
1.22 % |
Base Level Counts
| Bases |
# |
% |
| Total |
136139572661 |
100% |
| Passed |
111760517850 |
82.09 % |
| Trimmed |
5833243076 |
4.28 % |
| Clipped |
212374134 |
0.16 % |
| Overlapping |
16388534979 |
12.04 % |
| LowQuality |
1944902622 |
1.43 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |