/EXTERNAL BLUEPRINT/methylation/K006277_11_lane_gembs

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SAMPLE K006277_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26879731 22071395 82.11 %
NonRefCpG 234276 96692 41.27 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006277_11_lane_gembs_coverage_refCpG.png ./IMG//K006277_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006277_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006277_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006277_11_lane_gembs_quality_refcpg.png ./IMG//K006277_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006277_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11140241 21.41 % 9299338 20.04 % 140029 32.04 % 57508 21.12 %
Intermediate (0.3-0.7) 14784899 28.42 % 12442121 26.81 % 135536 31.01 % 85907 31.54 %
Methylated (0.7-1) 26105711 50.17 % 24666161 53.15 % 161536 36.96 % 128940 47.34 %
Median Methylation 0.700 0.720 0.550 0.670