/EXTERNAL BLUEPRINT/K006291_10_lane_gembs

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SAMPLE K006291_10_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1096947474 100.00 % 548473737 100.00 % 548473737 100.00 %
General Reads 1052018243 95.90 % 527612199 96.20 % 524406044 95.61 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16137780 1.47 % 8085188 1.47 % 8052592 1.47 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28791451 2.62 % 12776350 2.33 % 16015101 2.92 %
Bisulfite_reads C2T 565045988 51.51 % 283395899 51.67 % 281650089 51.35 %
Bisulfite_reads G2A 503110035 45.86 % 252301488 46.00 % 250808547 45.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 421984741
Average Unique 76.94 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40075600214 35.82 % 15968864039 28.54 % 24106736175 43.09 %
Base Counts Overall C 15360973036 13.73 % 872734747 1.56 % 14488238289 25.90 %
Base Counts Overall G 15575834893 13.92 % 14740874242 26.35 % 834960651 1.49 %
Base Counts Overall T 39742740402 35.52 % 23808373859 42.56 % 15934366543 28.48 %
Base Counts Overall N 1133493803 1.01 % 553474287 0.99 % 580019516 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988357221226241
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 518388636



Mapping Quality

Mapping Quality Histogram
K006291_10_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006291_10_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S001MJ.Bisulfite-Seq.DNA_Methylation.EGAX00001147733_10