/EXTERNAL BLUEPRINT/methylation/K006291_10_lane_gembs

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SAMPLE K006291_10_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26628006 20186453 75.81 %
NonRefCpG 333082 154007 46.24 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006291_10_lane_gembs_coverage_refCpG.png ./IMG//K006291_10_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006291_10_lane_gembs_coverage_nonRefCpG.png ./IMG//K006291_10_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006291_10_lane_gembs_quality_refcpg.png ./IMG//K006291_10_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006291_10_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6103059 12.99 % 4406072 11.30 % 103857 18.59 % 28714 8.61 %
Intermediate (0.3-0.7) 7128852 15.18 % 4697096 12.04 % 123202 22.05 % 52632 15.78 %
Methylated (0.7-1) 33732932 71.83 % 29903417 76.66 % 331728 59.37 % 252187 75.61 %
Median Methylation 0.860 0.880 0.780 0.870