/EXTERNAL BLUEPRINT/K006302_18_lane_gembs

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SAMPLE K006302_18_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1331790628 100.00 % 665895314 100.00 % 665895314 100.00 %
General Reads 1067111271 80.13 % 512165731 76.91 % 554945540 83.34 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 37753954 2.83 % 18890265 2.84 % 18863689 2.83 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 226925403 17.04 % 134839318 20.25 % 92086085 13.83 %
Bisulfite_reads C2T 574600875 43.14 % 277262278 41.64 % 297338597 44.65 %
Bisulfite_reads G2A 530264350 39.82 % 253793718 38.11 % 276470632 41.52 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 419878523
Average Unique 63.05 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 48892827887 35.99 % 20273062366 29.85 % 28619765521 42.14 %
Base Counts Overall C 19447978633 14.32 % 3706653815 5.46 % 15741324818 23.18 %
Base Counts Overall G 22064028149 16.24 % 16636445359 24.49 % 5427582790 7.99 %
Base Counts Overall T 44060393572 32.43 % 26615372808 39.19 % 17445020764 25.68 %
Base Counts Overall N 1377415815 1.01 % 689787680 1.02 % 687628135 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988209032081685
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 508941500



Mapping Quality

Mapping Quality Histogram
K006302_18_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006302_18_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
pz_290.Bisulfite-Seq.DNA_Methylation.EGAX00001205548