/EXTERNAL BLUEPRINT/mapping_coverage/K006302_18_lane_gembs
BACK
SAMPLE K006302_18_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
950919778 |
100% |
93723005910 |
100% |
| Mapped |
894369809 |
94.05 % |
88011459041 |
93.91 % |
| Passed |
576477366 |
60.62 % |
55904322298 |
59.65 % |
| NotPassed |
317892443 |
33.43 % |
32107136743 |
34.26 % |
| |
|
|
|
|
| LowMAPQ |
179552120 |
18.88 % |
18134764120 |
19.35 % |
| MateUnmapped |
56549969 |
5.95 % |
5711546869 |
6.09 % |
| Duplicate |
116410301 |
12.24 % |
11757440401 |
12.54 % |
| BadOrientation |
8 |
0.00 % |
808 |
0.00 % |
| LargeInsertSize |
17240 |
0.00 % |
1741240 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
21912774 |
2.30 % |
2213190174 |
2.36 % |
| Unmapped |
56549969 |
5.95 % |
5711546869 |
6.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
58193722672 |
100% |
| Passed |
52351100402 |
89.96 % |
| Trimmed |
2758678663 |
4.74 % |
| Clipped |
68919828 |
0.12 % |
| Overlapping |
2220480546 |
3.82 % |
| LowQuality |
794543233 |
1.37 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |