/EXTERNAL BLUEPRINT/methylation/K006302_18_lane_gembs

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SAMPLE K006302_18_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26677738 19960863 74.82 %
NonRefCpG 369566 153070 41.42 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006302_18_lane_gembs_coverage_refCpG.png ./IMG//K006302_18_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006302_18_lane_gembs_coverage_nonRefCpG.png ./IMG//K006302_18_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006302_18_lane_gembs_quality_refcpg.png ./IMG//K006302_18_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006302_18_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6833271 13.94 % 4696947 11.61 % 165370 25.33 % 42078 11.42 %
Intermediate (0.3-0.7) 7920088 16.15 % 5045873 12.47 % 147140 22.53 % 62343 16.92 %
Methylated (0.7-1) 34280415 69.91 % 30712338 75.92 % 340458 52.14 % 264106 71.67 %
Median Methylation 0.860 0.890 0.720 0.870