/EXTERNAL BLUEPRINT/mapping_coverage/K010540_1_lane_gembs
BACK
SAMPLE K010540_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
247038858 |
100% |
22134389133 |
100% |
| Mapped |
244472103 |
98.96 % |
21875146878 |
98.83 % |
| Passed |
198175318 |
80.22 % |
17199171593 |
77.70 % |
| NotPassed |
46296785 |
18.74 % |
4675975285 |
21.13 % |
| |
|
|
|
|
| LowMAPQ |
41383216 |
16.75 % |
4179704816 |
18.88 % |
| MateUnmapped |
2566755 |
1.04 % |
259242255 |
1.17 % |
| Duplicate |
1214092 |
0.49 % |
122623292 |
0.55 % |
| BadOrientation |
4 |
0.00 % |
404 |
0.00 % |
| LargeInsertSize |
3562 |
0.00 % |
359762 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3695911 |
1.50 % |
373287011 |
1.69 % |
| Unmapped |
2566755 |
1.04 % |
259242255 |
1.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
20011231606 |
100% |
| Passed |
16153566834 |
80.72 % |
| Trimmed |
849712403 |
4.25 % |
| Clipped |
22587958 |
0.11 % |
| Overlapping |
2789472055 |
13.94 % |
| LowQuality |
195892356 |
0.98 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |