/EXTERNAL BLUEPRINT/K006376_15_lane_gembs/182CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001343010_15

BACK

SAMPLE K006376_15_lane_gembs LANE 182CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001343010_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1345338460 100.00 % 672669230 100.00 % 672669230 100.00 %
General Reads 1314518400 97.71 % 660046213 98.12 % 654472187 97.29 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5062109 0.38 % 2540226 0.38 % 2521883 0.37 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25757951 1.91 % 10082791 1.50 % 15675160 2.33 %
Bisulfite_reads C2T 676976976 50.32 % 339902446 50.53 % 337074530 50.11 %
Bisulfite_reads G2A 642603533 47.77 % 322683993 47.97 % 319919540 47.56 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 556726449
Average Unique 82.76 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 53211721554 38.78 % 20399384443 29.73 % 32812337111 47.82 %
Base Counts Overall C 14705104876 10.72 % 603127376 0.88 % 14101977500 20.55 %
Base Counts Overall G 14846130825 10.82 % 14266571480 20.79 % 579559345 0.84 %
Base Counts Overall T 53092246321 38.69 % 32666916887 47.61 % 20425329434 29.77 %
Base Counts Overall N 1369319344 1.00 % 676261274 0.99 % 693058070 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992974506657143
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 641247222



Mapping Quality

Mapping Quality Histogram
182CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001343010_15.mapq.png



Read Length

Read Length Reads
101 672669230
101 672669230



Insert Size Plot

Insert Size Histogram
182CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001343010_15.isize.png