/EXTERNAL BLUEPRINT/mapping_coverage/K006376_15_lane_gembs
BACK
SAMPLE K006376_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1311164267 |
100% |
119129225717 |
100% |
| Mapped |
1297983233 |
98.99 % |
117797941283 |
98.88 % |
| Passed |
1110275571 |
84.68 % |
98839467421 |
82.97 % |
| NotPassed |
187707662 |
14.32 % |
18958473862 |
15.91 % |
| |
|
|
|
|
| LowMAPQ |
164798848 |
12.57 % |
16644683648 |
13.97 % |
| MateUnmapped |
13181034 |
1.01 % |
1331284434 |
1.12 % |
| Duplicate |
3355384 |
0.26 % |
338893784 |
0.28 % |
| BadOrientation |
16 |
0.00 % |
1616 |
0.00 % |
| LargeInsertSize |
6318 |
0.00 % |
638118 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19547096 |
1.49 % |
1974256696 |
1.66 % |
| Unmapped |
13181034 |
1.01 % |
1331284434 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
112130859631 |
100% |
| Passed |
92673602318 |
82.65 % |
| Trimmed |
4864276123 |
4.34 % |
| Clipped |
139820588 |
0.12 % |
| Overlapping |
13151571622 |
11.73 % |
| LowQuality |
1301588980 |
1.16 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |