/EXTERNAL BLUEPRINT/methylation/K006376_15_lane_gembs

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SAMPLE K006376_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26884516 24038096 89.41 %
NonRefCpG 253732 191172 75.34 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006376_15_lane_gembs_coverage_refCpG.png ./IMG//K006376_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006376_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006376_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006376_15_lane_gembs_quality_refcpg.png ./IMG//K006376_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006376_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9668496 18.22 % 8616480 17.48 % 77633 16.02 % 54120 13.55 %
Intermediate (0.3-0.7) 11425392 21.53 % 10240901 20.77 % 120937 24.95 % 93011 23.29 %
Methylated (0.7-1) 31970119 60.25 % 30447910 61.75 % 286057 59.03 % 252203 63.16 %
Median Methylation 0.790 0.800 0.780 0.800