/EXTERNAL BLUEPRINT/K006310_21_lane_gembs/S002R5.Bisulfite-Seq.DNA_Methylation.EGAX00001208464_21

BACK

SAMPLE K006310_21_lane_gembs LANE S002R5.Bisulfite-Seq.DNA_Methylation.EGAX00001208464_21

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1183316318 100.00 % 591658159 100.00 % 591658159 100.00 %
General Reads 1127971490 95.32 % 564880148 95.47 % 563091342 95.17 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 23060366 1.95 % 11551210 1.95 % 11509156 1.95 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 32284462 2.73 % 15226801 2.57 % 17057661 2.88 %
Bisulfite_reads C2T 605676110 51.18 % 303468383 51.29 % 302207727 51.08 %
Bisulfite_reads G2A 545355746 46.09 % 272962975 46.14 % 272392771 46.04 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 422808838
Average Unique 71.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40702664153 33.75 % 17080141081 28.32 % 23622523072 39.17 %
Base Counts Overall C 19103286449 15.84 % 1085618449 1.80 % 18017668000 29.88 %
Base Counts Overall G 19285977041 15.99 % 18143755626 30.09 % 1142221415 1.89 %
Base Counts Overall T 40310461423 33.42 % 23393653026 38.79 % 16916808397 28.05 %
Base Counts Overall N 1206230028 1.00 % 601141365 1.00 % 605088663 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9986457627746455
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 541528639



Mapping Quality

Mapping Quality Histogram
S002R5.Bisulfite-Seq.DNA_Methylation.EGAX00001208464_21.mapq.png



Read Length

Read Length Reads
101 546835488
100 44822671
101 546835488
100 44822671



Insert Size Plot

Insert Size Histogram
S002R5.Bisulfite-Seq.DNA_Methylation.EGAX00001208464_21.isize.png