/EXTERNAL BLUEPRINT/mapping_coverage/K006310_21_lane_gembs
BACK
SAMPLE K006310_21_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1107508330 |
100% |
95425687832 |
100% |
| Mapped |
1093807651 |
98.76 % |
94042958592 |
98.55 % |
| Passed |
792474715 |
71.55 % |
63630124089 |
66.68 % |
| NotPassed |
301332936 |
27.21 % |
30412834503 |
31.87 % |
| |
|
|
|
|
| LowMAPQ |
251177598 |
22.68 % |
25349872616 |
26.57 % |
| MateUnmapped |
13700679 |
1.24 % |
1382729240 |
1.45 % |
| Duplicate |
20558327 |
1.86 % |
2075871321 |
2.18 % |
| BadOrientation |
140 |
0.00 % |
14134 |
0.00 % |
| LargeInsertSize |
78622 |
0.01 % |
7935330 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
29518249 |
2.67 % |
2979141102 |
3.12 % |
| Unmapped |
13700679 |
1.24 % |
1382729240 |
1.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79951572061 |
100% |
| Passed |
59729216555 |
74.71 % |
| Trimmed |
3301936605 |
4.13 % |
| Clipped |
74590722 |
0.09 % |
| Overlapping |
16246857250 |
20.32 % |
| LowQuality |
598970929 |
0.75 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |