/EXTERNAL BLUEPRINT/methylation/K006310_21_lane_gembs

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SAMPLE K006310_21_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25680758 14238670 55.44 %
NonRefCpG 339662 89441 26.33 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006310_21_lane_gembs_coverage_refCpG.png ./IMG//K006310_21_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006310_21_lane_gembs_coverage_nonRefCpG.png ./IMG//K006310_21_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006310_21_lane_gembs_quality_refcpg.png ./IMG//K006310_21_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006310_21_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6003958 14.35 % 3605691 12.70 % 105031 20.38 % 20126 9.64 %
Intermediate (0.3-0.7) 10035083 23.98 % 4880111 17.19 % 156431 30.35 % 45481 21.79 %
Methylated (0.7-1) 25814972 61.68 % 19902293 70.11 % 253901 49.27 % 143156 68.57 %
Median Methylation 0.780 0.820 0.690 0.810