/EXTERNAL BLUEPRINT/K006328_15_lane_gembs/S007SK.Bisulfite-Seq.DNA_Methylation.EGAX00001236263_15

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SAMPLE K006328_15_lane_gembs LANE S007SK.Bisulfite-Seq.DNA_Methylation.EGAX00001236263_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1293180442 100.00 % 646590221 100.00 % 646590221 100.00 %
General Reads 1248719352 96.56 % 626159214 96.84 % 622560138 96.28 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22248651 1.72 % 11142216 1.72 % 11106435 1.72 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 22212439 1.72 % 9288791 1.44 % 12923648 2.00 %
Bisulfite_reads C2T 676803190 52.34 % 339422632 52.49 % 337380558 52.18 %
Bisulfite_reads G2A 594164813 45.95 % 297878798 46.07 % 296286015 45.82 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 492671156
Average Unique 76.20 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 46175480270 35.01 % 18640508226 28.26 % 27534972044 41.75 %
Base Counts Overall C 19217132112 14.57 % 943014334 1.43 % 18274117778 27.71 %
Base Counts Overall G 19373953971 14.69 % 18450715784 27.98 % 923238187 1.40 %
Base Counts Overall T 45812238807 34.73 % 27266800005 41.34 % 18545438802 28.12 %
Base Counts Overall N 1325599924 1.00 % 651164193 0.99 % 674435731 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.999263832281444
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 610082148



Mapping Quality

Mapping Quality Histogram
S007SK.Bisulfite-Seq.DNA_Methylation.EGAX00001236263_15.mapq.png



Read Length

Read Length Reads
101 646590221
101 646590221



Insert Size Plot

Insert Size Histogram
S007SK.Bisulfite-Seq.DNA_Methylation.EGAX00001236263_15.isize.png