/EXTERNAL BLUEPRINT/mapping_coverage/K006328_15_lane_gembs
BACK
SAMPLE K006328_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1227322245 |
100% |
107124845423 |
100% |
| Mapped |
1215126944 |
99.01 % |
105893120022 |
98.85 % |
| Passed |
931772691 |
75.92 % |
77274340469 |
72.13 % |
| NotPassed |
283354253 |
23.09 % |
28618779553 |
26.72 % |
| |
|
|
|
|
| LowMAPQ |
240299976 |
19.58 % |
24270297576 |
22.66 % |
| MateUnmapped |
12195301 |
0.99 % |
1231725401 |
1.15 % |
| Duplicate |
21459704 |
1.75 % |
2167430104 |
2.02 % |
| BadOrientation |
82 |
0.00 % |
8282 |
0.00 % |
| LargeInsertSize |
38988 |
0.00 % |
3937788 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
21555503 |
1.76 % |
2177105803 |
2.03 % |
| Unmapped |
12195301 |
0.99 % |
1231725401 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
94103060268 |
100% |
| Passed |
72753622878 |
77.31 % |
| Trimmed |
3925886655 |
4.17 % |
| Clipped |
104583059 |
0.11 % |
| Overlapping |
16724136740 |
17.77 % |
| LowQuality |
594830936 |
0.63 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |