/EXTERNAL BLUEPRINT/methylation/K006328_15_lane_gembs

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SAMPLE K006328_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26382601 19613061 74.34 %
NonRefCpG 340736 145195 42.61 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006328_15_lane_gembs_coverage_refCpG.png ./IMG//K006328_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006328_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006328_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006328_15_lane_gembs_quality_refcpg.png ./IMG//K006328_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006328_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5921833 13.08 % 4317093 11.65 % 101972 18.57 % 25716 8.39 %
Intermediate (0.3-0.7) 6631930 14.64 % 4160015 11.23 % 123731 22.53 % 46398 15.13 %
Methylated (0.7-1) 32731780 72.28 % 28566493 77.12 % 323532 58.91 % 234468 76.48 %
Median Methylation 0.860 0.880 0.780 0.870