/cemt/A36005_3_lane_gembs

BACK

SAMPLE A36005_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1371785774 100.00 % 685892887 100.00 % 685892887 100.00 %
General Reads 1348206538 98.28 % 676700069 98.66 % 671506469 97.90 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 108588 0.01 % 54463 0.01 % 54125 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23470648 1.71 % 9138355 1.33 % 14332293 2.09 %
Bisulfite_reads C2T 686293678 50.03 % 344426112 50.22 % 341867566 49.84 %
Bisulfite_reads G2A 662021448 48.26 % 332328420 48.45 % 329693028 48.07 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 504437033
Average Unique 73.54 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 68070070406 39.38 % 30269566359 35.03 % 37800504047 43.74 %
Base Counts Overall C 17435560187 10.09 % 847099627 0.98 % 16588460560 19.19 %
Base Counts Overall G 17761528475 10.28 % 16820218932 19.46 % 941309543 1.09 %
Base Counts Overall T 67753131372 39.20 % 37798292139 43.74 % 29954839233 34.66 %
Base Counts Overall N 1824717084 1.06 % 687326705 0.80 % 1137390379 1.32 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9930530442850378
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 575935054



Mapping Quality

Mapping Quality Histogram
A36005_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36005_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C415FANXX_3_1
C6HN2ANXX_3_1
C6HN2ANXX_4_1