/cemt/mapping_coverage/A36005_3_lane_gembs
BACK
SAMPLE A36005_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1340276274 |
100% |
141444369160 |
100% |
| Mapped |
1322606922 |
98.68 % |
139235700160 |
98.44 % |
| Passed |
999172259 |
74.55 % |
98806367285 |
69.86 % |
| NotPassed |
323434663 |
24.13 % |
40429332875 |
28.58 % |
| |
|
|
|
|
| LowMAPQ |
262836448 |
19.61 % |
32854556000 |
23.23 % |
| MateUnmapped |
17669352 |
1.32 % |
2208669000 |
1.56 % |
| Duplicate |
8154767 |
0.61 % |
1019345875 |
0.72 % |
| BadOrientation |
706 |
0.00 % |
88250 |
0.00 % |
| LargeInsertSize |
36714 |
0.00 % |
4589250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
52406028 |
3.91 % |
6550753500 |
4.63 % |
| Unmapped |
17669352 |
1.32 % |
2208669000 |
1.56 % |
Base Level Counts
| Bases |
# |
% |
| Total |
124883369750 |
100% |
| Passed |
94034656048 |
75.30 % |
| Trimmed |
4335895639 |
3.47 % |
| Clipped |
447823211 |
0.36 % |
| Overlapping |
25629179254 |
20.52 % |
| LowQuality |
435815598 |
0.35 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |