/cemt/methylation/A36005_3_lane_gembs

BACK

SAMPLE A36005_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26685999 16831919 63.07 %
NonRefCpG 307369 148528 48.32 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36005_3_lane_gembs_coverage_refCpG.png ./IMG//A36005_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36005_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36005_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36005_3_lane_gembs_quality_refcpg.png ./IMG//A36005_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36005_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5595748 10.88 % 1897273 5.12 % 99474 17.40 % 24918 7.04 %
Intermediate (0.3-0.7) 13774665 26.77 % 8310458 22.41 % 159190 27.84 % 83579 23.62 %
Methylated (0.7-1) 32078410 62.35 % 26873055 72.47 % 313133 54.76 % 245354 69.34 %
Median Methylation 0.790 0.840 0.740 0.820