/cemt/A36013_3_lane_gembs

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SAMPLE A36013_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1167543136 100.00 % 583771568 100.00 % 583771568 100.00 %
General Reads 1151052265 98.59 % 578107165 99.03 % 572945100 98.15 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 99358 0.01 % 49940 0.01 % 49418 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 16391513 1.40 % 5614463 0.96 % 10777050 1.85 %
Bisulfite_reads C2T 585529704 50.15 % 294034099 50.37 % 291495605 49.93 %
Bisulfite_reads G2A 565621919 48.45 % 284123006 48.67 % 281498913 48.22 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 478907370
Average Unique 82.04 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 58330677638 39.65 % 26027390982 35.38 % 32303286656 43.92 %
Base Counts Overall C 14517938804 9.87 % 646721008 0.88 % 13871217796 18.86 %
Base Counts Overall G 14728482470 10.01 % 14070247019 19.13 % 658235451 0.89 %
Base Counts Overall T 57992399098 39.42 % 32226083708 43.81 % 25766315390 35.03 %
Base Counts Overall N 1540937126 1.05 % 584774851 0.80 % 956162275 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9941691046676534
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 537721561



Mapping Quality

Mapping Quality Histogram
A36013_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36013_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C62GPANXX_5_1
C419NANXX_6_1
C62GPANXX_6_1